Pieter,

You have multiple "-q". It went into paup queue which has default wall time of 1 hour.

Option 1) if you know that your paup will finish within 480 hours (20 days), do this:
[ Notice the walltime specified to be 480 hours. Note there's only 1 -q ]

#!/bin/bash -l
#PBS -N paup-4b
#PBS -l nodes=1:ppn=2
#PBS -q paup
#PBS -l walltime=480:0:0
#PBS -m abe

module load paup-4b
paup -n SelectedPBS.nex > SelectedPBS.out

Option 2) If you don't know when your paup will finish, do this:
(serial_restr = serial restricted; paup is serial; Note there is only *1* -q option )

#!/bin/bash -l
#PBS -N paup-4b
#PBS -l nodes=1:ppn=2
#PBS -q serial_restr
#PBS -m abe

module load paup-4b
paup -n SelectedPBS.nex > SelectedPBS.out

Please give either option a try.

Thanks,
Robin

________________________________________
From: Research Computing Support [[log in to unmask]] On Behalf Of Pieter Pelser [[log in to unmask]]
Sent: Thursday, March 27, 2008 6:45 PM
To: [log in to unmask]
Subject: Problem with running PAUP

I'm trying to run a PAUP job on the Redhawk cluster, but for some
reason it terminates after an hour. Any idea what I'm doing wrong?

This is the job script that I'm using:

#!/bin/bash -l
#PBS -N paup-4b
#PBS -l nodes=1:ppn=2
#PBS -q par_restr
#PBS -q paup
#PBS -m abe

module load paup-4b
paup -n SelectedPBS.nex > SelectedPBS.out

Thanks!

Pieter

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Dr. Pieter B. Pelser

Miami University - Botany Department
316 Pearson Hall
Oxford, Ohio 45056
USA

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http://pieterpelser.blogspot.com/
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